PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G087600.2
Common NameB456_008G087600, LOC105763496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 301aa    MW: 34164.6 Da    PI: 6.4251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G087600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12122168455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR+++ ++f  L  l+P +     kK +Ka+iL  A+ Y+k+Lq
  Gorai.008G087600.2 122 DHVLAERKRREKLSQSFISLSALIPGL-----KKTDKASILGDAITYLKKLQ 168
                         58899**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16123184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-12123171No hitNo description
PfamPF000101.1E-9123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDPTLFPQY QMINPIDYSF HDFNFHSENY SSNPYYTIGN SFIETSQEVD DFKRQMKQLK  60
TNSWNSCITE NNIPPPPKPS SSSSSSHLIS FDNSNSYYAV DYDVKPKNEV GSFTRIPLHA  120
QDHVLAERKR REKLSQSFIS LSALIPGLKK TDKASILGDA ITYLKKLQDR VNVLEEQVAK  180
KTMESVIFVR KTQIYADDET SSSDESVHGQ SNNNPFPEIE ARVSDKDVLI RIHCKNNKGC  240
ISNIINEVEK LHLFVLNSHV LPFGQATLDI TITAQMEAEF SMTVKDLVKS LRLALLKFIM  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERKRRE
2127132RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437188.10.0PREDICTED: transcription factor bHLH19-like
TrEMBLA0A0D2PRC40.0A0A0D2PRC4_G
STRINGVIT_03s0088g01240.t013e-79(Vitis vinifera)
STRINGVIT_07s0205g00180.t013e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]